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POPTR_0005s08630.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s08630.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s08630.1Predicted protein (321 aa)    
Predicted Functional Partners:
POPTR_0013s14450.1
Predicted protein (298 aa)
   
        0.610
POPTR_0001s46750.1
Predicted protein (310 aa)
   
        0.595
POPTR_0015s04810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PID9_POPTR] (204 aa)
   
        0.593
POPTR_0014s08960.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH76_POPTR] (164 aa)
   
        0.590
POPTR_0014s10200.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFP7_POPTR] (172 aa)
   
        0.583
POPTR_0002s16850.1
Predicted protein (160 aa)
   
        0.582
POPTR_0019s14050.1
Predicted protein (296 aa)
   
        0.577
POPTR_0004s10180.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH66_POPTR] (285 aa)
   
        0.576
POPTR_0003s01500.1
Predicted protein (256 aa)
   
        0.569
POPTR_0003s09460.1
Predicted protein (373 aa)
   
        0.562
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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