STRINGSTRING
POPTR_0005s09160.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s09160.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s09160.1Predicted protein (85 aa)    
Predicted Functional Partners:
POPTR_0535s00230.1
Glycosyltransferase (466 aa)
         
    0.900
POPTR_0019s11400.1
Predicted protein (177 aa)
         
    0.900
POPTR_0016s10450.1
Uncharacterized protein (333 aa)
         
    0.900
POPTR_0016s07910.1
Sinapyl alcohol dehydrogenase (SAD), mRNA [source-RefSeq DNA_predicted;Acc-XM_002322786.1] (296 aa)
         
    0.900
POPTR_0016s06540.1
Cinnamyl alcohol dehydrogenase-like protein [source-UniProtKB/TrEMBL;Acc-B9IIG5_POPTR] (362 aa)
         
    0.900
POPTR_0016s02390.1
Uncharacterized protein (354 aa)
         
    0.900
POPTR_0016s02360.1
Cinnamyl alcohol dehydrogenase-like protein [source-UniProtKB/TrEMBL;Acc-B9IHF9_POPTR] (354 aa)
         
    0.900
POPTR_0015s00550.1
Caffeic acid 3-O-methyltransferase [source-UniProtKB/TrEMBL;Acc-B2Z6Q7_POPTR] (364 aa)
         
    0.900
POPTR_0014s10220.1
Catechol o-methyltransferase relatedPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P937_POPTR] (358 aa)
         
    0.900
POPTR_0014s10210.1
Catechol o-methyltransferase [source-UniProtKB/TrEMBL;Acc-B9I955_POPTR] (388 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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