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POPTR_0005s09260.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s09260.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s09260.1Predicted protein (159 aa)    
Predicted Functional Partners:
POPTR_0012s05460.1
Predicted protein (965 aa)
       
      0.769
POPTR_0005s14670.1
Predicted protein (402 aa)
       
      0.769
POPTR_0001s31400.1
Predicted protein (300 aa)
       
      0.752
POPTR_1248s00200.1
Uncharacterized protein (170 aa)
       
      0.705
POPTR_0874s00200.1
Uncharacterized protein (121 aa)
       
      0.705
POPTR_0019s03520.1
Uncharacterized protein (1019 aa)
       
      0.705
POPTR_0015s12330.1
Predicted protein; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (290 aa)
       
      0.705
POPTR_0013s04340.1
Predicted protein (1070 aa)
       
      0.705
POPTR_0006s13660.1
Predicted protein (642 aa)
       
      0.705
POPTR_0003s13700.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFG0_POPTR] (687 aa)
       
      0.705
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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