STRINGSTRING
POPTR_0005s09410.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s09410.1" - annotation not available in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s09410.1annotation not available (245 aa)    
Predicted Functional Partners:
POPTR_0004s03630.1
Uncharacterized protein (517 aa)
     
   
  0.639
POPTR_0002s25690.1
Tyrosine decarboxylase family protein (480 aa)
     
   
  0.575
POPTR_0014s17750.1
Uncharacterized protein (606 aa)
           
  0.543
POPTR_0003s08710.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002329490.1] (447 aa)
           
  0.543
POPTR_0001s02810.1
Proton-dependent oligopeptide transport family protein (553 aa)
           
  0.543
POPTR_0010s12260.1
annotation not available (132 aa)
           
  0.522
POPTR_0008s12870.1
Carboxypeptidase; Belongs to the peptidase S10 family (443 aa)
           
  0.522
POPTR_0008s12860.1
Carboxypeptidase; Belongs to the peptidase S10 family (452 aa)
           
  0.522
POPTR_0005s06150.1
Carboxypeptidase; Belongs to the peptidase S10 family (461 aa)
           
  0.522
POPTR_0010s24010.1
annotation not available (233 aa)
           
  0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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