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POPTR_0005s09690.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s09690.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s09690.1Predicted protein (92 aa)    
Predicted Functional Partners:
POPTR_0025s00360.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002325141.1] (251 aa)
     
  0.948
POPTR_0018s12480.1
Uncharacterized protein (220 aa)
     
  0.948
POPTR_0006s06030.1
Predicted protein (295 aa)
     
  0.948
POPTR_1770s00200.1
Derlin ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (189 aa)
     
  0.925
POPTR_0021s01020.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (243 aa)
     
  0.925
POPTR_0006s15780.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (249 aa)
     
  0.925
POPTR_0004s24140.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (276 aa)
     
  0.925
POPTR_0004s01780.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
     
  0.925
POPTR_0307s00200.1
Predicted protein (167 aa)
     
  0.907
POPTR_0015s04640.1
Predicted protein (683 aa)
     
  0.907
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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