STRINGSTRING
POPTR_0005s10180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s10180.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s10180.1Predicted protein (719 aa)    
Predicted Functional Partners:
POPTR_0015s01950.1
Predicted protein (2228 aa)
     
 
  0.846
POPTR_0012s01860.1
Predicted protein (2230 aa)
       
 
  0.838
POPTR_0016s03630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE46_POPTR] (1472 aa)
       
 
  0.693
POPTR_0006s03660.1
Predicted protein (1628 aa)
       
 
  0.693
POPTR_0003s13040.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH57_POPTR]; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (904 aa)
     
    0.586
POPTR_0012s02180.1
Predicted protein (584 aa)
     
  0.579
POPTR_0008s07070.1
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1705 aa)
     
 
    0.576
POPTR_2006s00200.1
Uncharacterized protein (143 aa)
       
    0.571
POPTR_0006s25970.1
Predicted protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (842 aa)
       
    0.571
POPTR_0001s09660.1
Predicted protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (904 aa)
       
    0.571
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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