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POPTR_0005s10460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s10460.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s10460.1Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (1041 aa)    
Predicted Functional Partners:
POPTR_0015s03450.1
Uncharacterized protein (305 aa)
     
 
  0.878
POPTR_0012s06830.1
Uncharacterized protein (305 aa)
     
 
  0.878
POPTR_0010s16780.1
annotation not available (239 aa)
     
 
  0.878
POPTR_0008s09330.1
SNAP25 homologous protein SNAP30 (282 aa)
     
 
  0.878
POPTR_0005s12300.1
Hydrolase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI88_POPTR] (373 aa)
           
  0.878
POPTR_0016s11080.1
Uncharacterized protein (866 aa)
           
  0.857
POPTR_0005s25590.1
Uncharacterized protein (311 aa)
           
  0.807
POPTR_0002s02970.1
Zinc finger protein CONSTANS-LIKE 6 (310 aa)
           
  0.807
POPTR_0019s05240.1
Syntaxin 131 family protein; Belongs to the syntaxin family (304 aa)
       
 
  0.755
POPTR_0019s04620.1
Syntaxin-related protein KNOLLE; Belongs to the syntaxin family (313 aa)
       
 
  0.755
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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