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POPTR_0005s11290.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s11290.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s11290.1Predicted protein (197 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
   
 
  0.904
POPTR_0010s21300.1
annotation not available (218 aa)
       
 
  0.809
POPTR_0008s05460.1
GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT family protein (372 aa)
       
 
  0.809
POPTR_0016s01530.1
Rho GDP-dissociation inhibitor 1 family protein (257 aa)
     
 
  0.777
POPTR_0014s16110.1
Uncharacterized protein (253 aa)
     
 
  0.777
POPTR_0006s01210.1
Rho GDP-dissociation inhibitor 1 family protein (243 aa)
     
 
  0.777
POPTR_0002s26090.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI76_POPTR] (251 aa)
     
 
  0.777
POPTR_0002s23560.1
Uncharacterized protein (249 aa)
     
 
  0.777
POPTR_0002s22030.1
Uncharacterized protein (250 aa)
     
 
  0.777
POPTR_0005s17780.1
annotation not available (562 aa)
       
 
  0.770
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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