STRINGSTRING
POPTR_0005s11330.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s11330.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s11330.1Predicted protein (209 aa)    
Predicted Functional Partners:
POPTR_0013s09170.1
Uncharacterized protein (288 aa)
       
  0.614
POPTR_0673s00200.1
DNA repair protein and transcription factor (79 aa)
       
      0.595
POPTR_0001s09670.1
Predicted protein (803 aa)
       
      0.595
POPTR_0006s04760.1
Predicted protein (510 aa)
     
 
  0.561
POPTR_0014s07420.1
Predicted protein; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2- thiolation reaction by being thiocarboxylated (-COSH) at its C- terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces [...] (99 aa)
       
 
  0.560
POPTR_0003s01150.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGH5_POPTR] (531 aa)
         
  0.525
POPTR_0001s27900.1
Predicted protein; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group (201 aa)
   
  0.524
POPTR_0009s15810.1
Predicted protein (653 aa)
         
  0.520
POPTR_0006s11570.1
Predicted protein (434 aa)
         
  0.493
POPTR_0001s35220.1
Predicted protein (478 aa)
         
  0.493
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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