• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0005s11830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s11830.1" - Gdp-mannose 4,6-dehydratase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s11830.1Gdp-mannose 4,6-dehydratase (368 aa)    
Predicted Functional Partners:
POPTR_0006s19300.1
Uncharacterized protein (323 aa)
  0.994
POPTR_0018s11060.1
GDP-4-keto-6-deoxy-D-mannose-3 family protein (323 aa)
 
  0.991
POPTR_0013s03790.4
NAD-dependent epimerase/dehydratase family protein (375 aa)
   
  0.967
POPTR_0005s05450.1
NAD-dependent epimerase/dehydratase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGJ0_POPTR] (375 aa)
   
  0.958
POPTR_0005s27230.1
Dolichyl-phosphate beta-D-mannosyltransferase family protein (238 aa)
   
  0.896
POPTR_0002s01130.1
Dolichyl-phosphate beta-D-mannosyltransferase family protein (240 aa)
   
  0.896
POPTR_0001s40470.1
Glycosyl transferase family 1 family protein (481 aa)
   
 
  0.884
POPTR_0010s20620.1
Cytokinesis defective 1 family protein (361 aa)
   
 
  0.801
POPTR_0008s06050.1
Cytokinesis defective 1 family protein (361 aa)
   
 
  0.801
POPTR_0008s00720.1
Cytokinesis defective 1 family protein (375 aa)
   
 
  0.801
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (6%) [HD]