STRINGSTRING
POPTR_0005s11920.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s11920.1" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s11920.1Uncharacterized protein (1524 aa)    
Predicted Functional Partners:
POPTR_0015s04250.1
Predicted protein (328 aa)
     
      0.894
POPTR_0012s04700.1
Predicted protein (328 aa)
     
      0.894
POPTR_0004s09310.1
Predicted protein (1142 aa)
     
 
    0.754
POPTR_0168s00200.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-A9PA83_POPTR]; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (155 aa)
       
  0.694
POPTR_0018s10080.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-A9PA83_POPTR] (103 aa)
       
  0.694
POPTR_0018s10070.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-A9PA83_POPTR] (103 aa)
       
  0.694
POPTR_0018s10050.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-B9ILZ3_POPTR]; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (92 aa)
       
  0.694
POPTR_0018s10040.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-A9PA83_POPTR] (103 aa)
       
  0.694
POPTR_0010s22090.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-A9PA83_POPTR] (103 aa)
       
  0.694
POPTR_0010s22080.1
Histone H4 [source-UniProtKB/TrEMBL;Acc-A9PA83_POPTR] (103 aa)
       
  0.694
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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