STRINGSTRING
POPTR_0005s12390.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s12390.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s12390.1Uncharacterized protein (85 aa)    
Predicted Functional Partners:
POPTR_0010s10710.1
Uncharacterized protein (552 aa)
       
 
  0.620
POPTR_0008s14450.1
Uncharacterized protein (315 aa)
       
 
  0.620
POPTR_0001s35610.1
Uncharacterized protein (231 aa)
     
 
  0.600
POPTR_0014s05590.1
Uncharacterized protein (600 aa)
           
  0.578
POPTR_0017s00980.1
DNAJ heat shock N-terminal domain-containing family protein (683 aa)
     
 
  0.554
POPTR_0004s07070.1
DNAJ heat shock N-terminal domain-containing family protein (685 aa)
     
 
  0.554
HUPB903
Ubiquitin-conjugating enzyme E2-17 kDa family protein; Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9PD36_POPTR]; Belongs to the ubiquitin-conjugating enzyme family (152 aa)
     
 
  0.544
HUPB901
Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9P8Z1_POPTR]; Belongs to the ubiquitin-conjugating enzyme family (152 aa)
     
 
  0.544
HUPB902
Ubiquitin-conjugating enzyme E2-17 kDa family protein; Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9PBR0_POPTR]; Belongs to the ubiquitin-conjugating enzyme family (152 aa)
     
 
  0.544
POPTR_0002s04730.1
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species- Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (so /.../NCBI BLink) (135 aa)
           
  0.541
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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