STRINGSTRING
POPTR_0005s12460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s12460.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s12460.1Predicted protein (166 aa)    
Predicted Functional Partners:
POPTR_0010s21030.1
Predicted protein (1119 aa)
     
  0.975
POPTR_0015s03830.1
Predicted protein; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles (914 aa)
       
 
  0.957
POPTR_0012s05130.1
Delta-adaptin family protein; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles (941 aa)
       
 
  0.957
POPTR_0009s15250.1
Predicted protein (1018 aa)
     
  0.932
POPTR_0004s20100.1
Predicted protein (1014 aa)
     
  0.932
POPTR_0016s10100.1
Annotation not available (700 aa)
     
  0.904
POPTR_0016s10090.1
GAMMA-ADAPTIN 1 family protein (159 aa)
     
  0.904
POPTR_0006s09390.1
Predicted protein (877 aa)
     
  0.904
POPTR_0004s24340.1
Predicted protein (980 aa)
     
  0.904
POPTR_0002s10530.1
Predicted protein (446 aa)
     
  0.893
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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