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POPTR_0005s12580.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s12580.1" - Putative uncharacterized protein [source:UniProtKB/TrEMBL in Populus trichocarpa
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
POPTR_0005s12580.1Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI24_POPTR] (481 aa)    
Predicted Functional Partners:
POPTR_0006s03080.1
Predicted protein (457 aa)
     
  0.986
POPTR_0009s08880.1
Predicted protein (888 aa)
     
  0.984
POPTR_0001s29710.1
Predicted protein (972 aa)
     
  0.983
POPTR_0003s05710.1
Predicted protein; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (202 aa)
     
  0.982
POPTR_0014s01360.1
Predicted protein (748 aa)
     
  0.982
POPTR_0005s27250.1
Predicted protein (132 aa)
     
  0.981
POPTR_0002s01120.1
Predicted protein (132 aa)
     
  0.981
POPTR_0013s00620.1
Predicted protein (150 aa)
     
  0.981
POPTR_0005s02450.1
Predicted protein (283 aa)
     
  0.981
POPTR_0013s01700.1
Predicted protein (296 aa)
     
  0.981
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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