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POPTR_0005s12730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s12730.1" - GRAS family transcription factor [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s12730.1GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9MXR4_POPTR] (548 aa)    
Predicted Functional Partners:
POPTR_0015s05200.1
Predicted protein (288 aa)
           
  0.553
POPTR_0012s03750.1
Predicted protein (284 aa)
           
  0.553
BBR/BPC10
Predicted protein (283 aa)
           
  0.553
POPTR_0010s11180.1
GAGA-motif binding transcriptional activator [source-UniProtKB/TrEMBL;Acc-A8D1A0_POPTR] (279 aa)
           
  0.553
BBR/BPC1
GAGA-motif binding transcriptional activatorPredicted proteinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A8D197_POPTR] (279 aa)
           
  0.553
POPTR_0014s02540.1
WOX4 protein [source-UniProtKB/TrEMBL;Acc-A0AAU0_POPTR] (213 aa)
       
      0.457
POPTR_0007s14130.1
WUS protein [source-UniProtKB/TrEMBL;Acc-A0AAS8_POPTR] (264 aa)
       
      0.457
POPTR_0005s11680.1
Predicted protein (264 aa)
       
      0.457
POPTR_0002s12560.1
WOX4 protein [source-UniProtKB/TrEMBL;Acc-A0AAU0_POPTR] (213 aa)
       
      0.457
POPTR_0015s05210.1
Predicted protein (238 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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