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POPTR_0005s12810.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s12810.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s12810.1Uncharacterized protein (350 aa)    
Predicted Functional Partners:
POPTR_0014s02080.1
Annotation not available (339 aa)
   
     
  0.675
POPTR_0458s00210.1
Uncharacterized protein (500 aa)
   
     
  0.674
POPTR_0016s05060.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9II27_POPTR] (527 aa)
   
     
  0.674
POPTR_0007s06300.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9HFW0_POPTR] (371 aa)
   
     
  0.674
POPTR_0006s05700.1
Predicted protein (528 aa)
   
     
  0.674
POPTR_0001s37400.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9NHL0_POPTR] (186 aa)
   
     
  0.671
POPTR_0005s02960.1
Cytochrome P450 (CYP76G4), mRNA [source-RefSeq DNA_predicted;Acc-XM_002332594.1] (447 aa)
   
     
  0.670
POPTR_0005s02950.1
Cytochrome P450, mRNA [source-RefSeq DNA_predicted;Acc-XM_002332590.1] (447 aa)
   
     
  0.669
POPTR_0007s06360.1
Uncharacterized protein (497 aa)
   
     
  0.668
POPTR_0007s06340.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9NBY7_POPTR] (282 aa)
   
     
  0.668
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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