STRINGSTRING
POPTR_0005s13910.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s13910.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s13910.1Predicted protein (470 aa)    
Predicted Functional Partners:
POPTR_0001s21600.1
Annotation not available (371 aa)
     
        0.616
POPTR_0001s21590.1
Hypothetical protein (125 aa)
     
        0.616
POPTR_0015s11500.1
Predicted protein (489 aa)
       
      0.579
POPTR_0012s10630.1
Predicted protein (489 aa)
       
      0.579
POPTR_0005s14990.1
Silencing group A protein [source-UniProtKB/TrEMBL;Acc-B9GV99_POPTR] (193 aa)
     
 
  0.573
POPTR_0004s09330.1
Silencing group A protein [source-UniProtKB/TrEMBL;Acc-B9H343_POPTR] (190 aa)
     
 
  0.573
POPTR_0009s01140.1
Predicted protein (373 aa)
     
   
  0.435
POPTR_0009s01130.1
Uncharacterized protein (319 aa)
     
   
  0.421
POPTR_0004s09320.1
Predicted protein (227 aa)
     
   
  0.421
POPTR_0004s09310.1
Predicted protein (1142 aa)
     
   
  0.421
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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