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POPTR_0005s14110.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s14110.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s14110.1Uncharacterized protein (316 aa)    
Predicted Functional Partners:
CHE901
Uncharacterized protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9HXC3_POPTR] (276 aa)
     
 
  0.763
HMGB904
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9N5K1_POPTR] (316 aa)
     
 
  0.742
POPTR_0017s08230.1
annotation not available (285 aa)
     
 
  0.728
HMGB903
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PG95_POPTR] (329 aa)
     
 
  0.728
POPTR_0001s32240.1
annotation not available (334 aa)
     
 
  0.728
POPTR_0005s22040.1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (649 aa)
           
  0.511
POPTR_0002s06340.1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (648 aa)
           
  0.511
GTF902
TATA-box binding family protein; Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9IPN5_POPTR] (201 aa)
     
 
  0.402
GTF901
TATA-box binding family protein; Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9I5Z0_POPTR] (201 aa)
     
 
  0.402
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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