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POPTR_0005s14580.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s14580.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s14580.1Predicted protein (328 aa)    
Predicted Functional Partners:
POPTR_0001s27440.1
Predicted protein (584 aa)
 
 
  0.999
POPTR_0009s06650.1
Predicted protein (583 aa)
 
 
  0.999
POPTR_0001s40210.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAQ7_POPTR] (286 aa)
   
 
  0.987
POPTR_0010s22830.1
P-aminobenzoate synthase [source-UniProtKB/TrEMBL;Acc-B9HUE3_POPTR] (928 aa)
   
  0.890
POPTR_0010s09790.1
Predicted protein (281 aa)
   
   
  0.818
POPTR_0008s15230.1
Uncharacterized protein (82 aa)
   
   
  0.818
POPTR_0008s15220.1
Uncharacterized protein (207 aa)
   
   
  0.818
POPTR_0004s08960.1
Predicted protein (326 aa)
   
   
 
0.801
POPTR_0011s16630.1
Predicted protein (486 aa)
   
   
  0.796
POPTR_0001s46960.1
Predicted protein; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (441 aa)
   
   
  0.796
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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