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STRINGSTRING
POPTR_0005s14690.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s14690.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s14690.1annotation not available (176 aa)    
Predicted Functional Partners:
POPTR_0008s00380.1
D111/G-patch domain-containing family protein (133 aa)
     
   
  0.462
POPTR_0001s45980.1
annotation not available (2703 aa)
     
   
  0.459
POPTR_0015s13100.1
Copper-binding family protein (139 aa)
           
  0.459
POPTR_0012s07040.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFW0_POPTR] (180 aa)
           
  0.459
POPTR_0009s16660.1
Cytochrome c1 family protein (310 aa)
     
 
  0.442
POPTR_0004s21400.1
Uncharacterized protein (343 aa)
     
 
  0.442
POPTR_0003s15130.1
Uncharacterized protein (291 aa)
     
   
  0.431
POPTR_0006s25760.1
Ubiquitin-conjugating enzyme family protein; Belongs to the ubiquitin-conjugating enzyme family (157 aa)
       
 
  0.427
POPTR_0012s05640.1
annotation not available (68 aa)
     
 
  0.405
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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