• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0005s15430.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s15430.1" - Delta-7-sterol-C5(6)-desaturase 1 family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s15430.1Delta-7-sterol-C5(6)-desaturase 1 family protein; Belongs to the sterol desaturase family (277 aa)    
Predicted Functional Partners:
POPTR_0001s25210.1
Sterol 4-alpha-methyl-oxidase 1 family protein; Belongs to the sterol desaturase family (269 aa)
     
  0.998
POPTR_0009s04220.1
Sterol 4-alpha-methyl-oxidase 1 family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9T0_POPTR]; Belongs to the sterol desaturase family (269 aa)
     
0.996
POPTR_0010s25980.1
Putative delta-7-sterol reductase family protein (259 aa)
     
  0.988
POPTR_0010s25970.1
Putative delta-7-sterol reductase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC70_POPTR] (434 aa)
     
  0.988
POPTR_0008s00580.1
Putative delta-7-sterol reductase family protein (437 aa)
     
  0.988
POPTR_0014s06510.1
Uncharacterized protein; Belongs to the sterol desaturase family (305 aa)
     
 
  0.981
POPTR_0003s11570.1
STEROL-4ALPHA-METHYL OXIDASE 1-1 family protein; Belongs to the sterol desaturase family (285 aa)
     
 
  0.981
POPTR_0001s08050.1
STEROL-4ALPHA-METHYL OXIDASE 1-1 family protein; Belongs to the sterol desaturase family (304 aa)
     
 
  0.981
POPTR_0010s17710.1
Diminuto family protein (563 aa)
     
 
  0.974
POPTR_0008s08440.2
Diminuto family protein (563 aa)
     
 
  0.974
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (11%) [HD]