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STRINGSTRING
POPTR_0005s16120.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s16120.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s16120.1Predicted protein (304 aa)    
Predicted Functional Partners:
POPTR_0004s01500.1
Met-10++ like family protein (1030 aa)
           
  0.602
POPTR_0016s12570.1
Phosphoinositide phosphatase family protein (604 aa)
       
 
  0.597
POPTR_0005s10350.1
Phosphoinositide phosphatase family protein (596 aa)
       
 
  0.597
POPTR_0018s14040.1
Uncharacterized protein; Belongs to the OSBP family (336 aa)
     
 
  0.568
POPTR_0006s07600.1
Uncharacterized protein; Belongs to the OSBP family (384 aa)
     
 
  0.568
POPTR_0019s13890.1
Uncharacterized protein (269 aa)
       
 
  0.504
POPTR_0014s05980.1
VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 (241 aa)
       
 
  0.504
POPTR_0014s05850.1
annotation not available (202 aa)
       
 
  0.504
POPTR_0013s14390.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9L6_POPTR] (264 aa)
       
 
  0.504
POPTR_0013s03190.1
VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-2 (240 aa)
       
 
  0.504
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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