STRINGSTRING
POPTR_0005s16590.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s16590.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s16590.1Predicted protein (477 aa)    
Predicted Functional Partners:
POPTR_0006s06920.1
Predicted protein (204 aa)
   
          0.420
POPTR_0019s02590.1
Uncharacterized protein (522 aa)
   
 
  0.416
POPTR_0004s10900.1
Predicted protein (487 aa)
   
 
  0.411
POPTR_0004s18990.1
Predicted protein (459 aa)
   
 
  0.403
POPTR_0231s00220.1
Predicted protein (620 aa)
       
  0.402
POPTR_0019s05340.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PF62_POPTR] (626 aa)
       
  0.402
POPTR_0014s11730.1
Predicted protein (765 aa)
       
  0.402
POPTR_0013s05230.1
Predicted protein (627 aa)
       
  0.402
POPTR_0010s15130.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002315985.1] (627 aa)
       
  0.402
POPTR_0009s15670.1
Uncharacterized protein (279 aa)
       
  0.402
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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