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POPTR_0005s17160.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s17160.1" - Methyl binding domain protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s17160.1Methyl binding domain protein [source-UniProtKB/TrEMBL;Acc-B9H725_POPTR] (1248 aa)    
Predicted Functional Partners:
POPTR_0002s21000.1
Predicted protein (1550 aa)
     
   
  0.608
POPTR_0014s12740.1
Predicted protein (1643 aa)
     
   
  0.590
POPTR_0014s13300.1
Methyl binding domain proteinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE20_POPTR] (182 aa)
           
  0.528
POPTR_0009s03270.1
Methyl binding domain protein [source-UniProtKB/TrEMBL;Acc-B9HPK6_POPTR] (236 aa)
           
  0.526
POPTR_0017s10880.1
Predicted protein (768 aa)
     
   
  0.525
POPTR_0005s02840.1
Uncharacterized protein (1330 aa)
     
   
  0.525
POPTR_0001s24690.1
Methyl binding domain proteinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAN4_POPTR] (214 aa)
           
  0.523
POPTR_0001s07980.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH36_POPTR] (374 aa)
     
   
  0.507
POPTR_0006s06690.1
Methyl binding domain protein [source-UniProtKB/TrEMBL;Acc-B9HAA5_POPTR] (286 aa)
     
   
  0.506
POPTR_0013s02090.1
Predicted protein (1429 aa)
           
  0.495
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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