STRINGSTRING
POPTR_0005s17170.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s17170.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s17170.1Predicted protein (676 aa)    
Predicted Functional Partners:
POPTR_0019s03470.1
Predicted protein (336 aa)
     
 
  0.873
POPTR_0010s20510.1
Predicted protein (316 aa)
     
 
  0.873
POPTR_0011s14970.1
Uncharacterized protein (1268 aa)
     
  0.860
POPTR_0001s45950.1
Predicted protein (1240 aa)
     
  0.860
POPTR_0016s03060.1
Predicted protein (661 aa)
   
  0.739
POPTR_0015s05960.1
Predicted protein (1177 aa)
       
  0.729
POPTR_0012s01120.1
Predicted protein (1207 aa)
       
  0.729
POPTR_0018s12840.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH83_POPTR] (424 aa)
     
  0.706
POPTR_0014s09060.1
Tubulin gamma-2 chain [source-UniProtKB/TrEMBL;Acc-B9GQG6_POPTR]; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (474 aa)
       
  0.704
POPTR_0002s16930.1
Tubulin gamma-2 chain (TUBG2), mRNA [source-RefSeq DNA_predicted;Acc-XM_002302580.1]; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (443 aa)
       
  0.704
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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