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POPTR_0005s17250.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s17250.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s17250.1Uncharacterized protein (304 aa)    
Predicted Functional Partners:
POPTR_0011s14170.1
Zinc finger family protein (149 aa)
       
 
  0.540
POPTR_0009s08900.1
Uncharacterized protein (83 aa)
           
  0.539
POPTR_0010s19250.1
Uncharacterized protein (608 aa)
           
  0.418
POPTR_0008s07240.1
Uncharacterized protein (594 aa)
           
  0.418
POPTR_0017s08680.1
Selenium binding family protein (483 aa)
           
  0.404
POPTR_0001s32880.1
Selenium binding family protein (483 aa)
           
  0.404
POPTR_0003s18190.1
DNAJ heat shock N-terminal domain-containing family protein (172 aa)
       
 
  0.401
POPTR_0001s03470.1
DNAJ heat shock N-terminal domain-containing family protein (170 aa)
       
 
  0.401
POPTR_0009s08190.1
Uncharacterized protein (241 aa)
           
  0.400
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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