STRINGSTRING
POPTR_0005s17720.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s17720.1" - D2/4-type cyclin [source:UniProtKB/TrEMBL in Populus trichocarpa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s17720.1D2/4-type cyclin [source-UniProtKB/TrEMBL;Acc-A8Y908_POPTR] (337 aa)    
Predicted Functional Partners:
POPTR_0004s14080.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBQ5_POPTR] (294 aa)
       
  0.979
POPTR_0016s14940.1
Predicted protein (308 aa)
       
  0.966
POPTR_0006s11390.1
Predicted protein (322 aa)
       
  0.966
POPTR_0004s22710.1
Putative uncharacterized proteinRegulatory subunit of cyclin-dependent kinase [source-UniProtKB/TrEMBL;Acc-A9PE37_POPTR]; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (129 aa)
       
  0.963
RBL901
Retinoblastoma-related protein [source-UniProtKB/Swiss-Prot;Acc-RBR_POPTR]; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1035 aa)
     
  0.957
POPTR_0006s08490.1
Predicted protein (197 aa)
       
 
  0.922
POPTR_0009s10640.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PER1_POPTR] (206 aa)
       
 
  0.922
POPTR_0004s14940.1
Kip-related cyclin-dependent kinase inhibitor 6 [source-UniProtKB/TrEMBL;Acc-B9N4X1_POPTR] (206 aa)
       
 
  0.922
POPTR_0002s24360.1
Kip-related cyclin-dependent kinase inhibitor 3 [source-UniProtKB/TrEMBL;Acc-B9GQH5_POPTR] (223 aa)
       
 
  0.920
POPTR_0016s10600.1
Predicted protein (59 aa)
       
 
  0.918
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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