STRINGSTRING
POPTR_0005s18240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s18240.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s18240.1Predicted protein (338 aa)    
Predicted Functional Partners:
POPTR_0018s06810.1
Predicted protein (357 aa)
   
0.857
POPTR_0008s01030.1
Predicted protein (365 aa)
   
0.855
POPTR_0010s25570.1
Predicted protein (352 aa)
   
0.855
POPTR_0018s05420.1
Predicted protein (380 aa)
   
0.855
POPTR_0001s02130.1
Predicted protein (332 aa)
   
0.855
POPTR_0001s35290.1
Predicted protein (521 aa)
   
0.854
POPTR_0006s14850.1
Predicted protein (355 aa)
   
0.852
POPTR_0008s18410.1
Predicted protein (320 aa)
   
0.851
POPTR_0012s04010.1
Predicted protein (320 aa)
   
0.851
POPTR_0015s05400.1
Predicted protein (321 aa)
   
0.850
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (22%) [HD]