STRINGSTRING
POPTR_0005s18340.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s18340.1" - SET domain protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s18340.1SET domain protein [source-UniProtKB/TrEMBL;Acc-B9H6I0_POPTR] (917 aa)    
Predicted Functional Partners:
POPTR_0001s44290.1
Polycomb group protein [source-UniProtKB/TrEMBL;Acc-B9I7G3_POPTR] (371 aa)
     
  0.985
POPTR_0003s07930.1
Putative uncharacterized protein VEF904 [source-UniProtKB/TrEMBL;Acc-B9GYN4_POPTR] (433 aa)
     
  0.975
POPTR_0001s11740.1
Putative uncharacterized protein VEF901 [source-UniProtKB/TrEMBL;Acc-B9GK37_POPTR] (626 aa)
     
  0.975
POPTR_0003s15010.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-B9GYE1_POPTR] (566 aa)
     
  0.974
POPTR_0014s17790.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9IB49_POPTR] (424 aa)
     
  0.932
POPTR_0002s22430.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-A9PHH9_POPTR] (424 aa)
     
  0.930
POPTR_0004s18130.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9H1A2_POPTR] (417 aa)
     
  0.923
POPTR_0018s06840.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9N5H1_POPTR] (467 aa)
     
  0.922
POPTR_0009s13750.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9HR56_POPTR] (418 aa)
     
  0.920
POPTR_0006s15630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-B9H8X1_POPTR] (502 aa)
     
  0.920
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (15%) [HD]