STRINGSTRING
POPTR_0005s18550.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s18550.1" - D3-type cyclinPredicted protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s18550.1D3-type cyclinPredicted protein [source-UniProtKB/TrEMBL;Acc-A8Y914_POPTR] (371 aa)    
Predicted Functional Partners:
POPTR_0004s14080.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBQ5_POPTR] (294 aa)
       
  0.982
POPTR_0004s22710.1
Putative uncharacterized proteinRegulatory subunit of cyclin-dependent kinase [source-UniProtKB/TrEMBL;Acc-A9PE37_POPTR]; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (129 aa)
       
  0.970
POPTR_0015s10280.1
Predicted protein (324 aa)
       
    0.967
POPTR_0012s09510.1
Predicted protein (311 aa)
       
    0.960
RBL901
Retinoblastoma-related protein [source-UniProtKB/Swiss-Prot;Acc-RBR_POPTR]; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1035 aa)
     
  0.957
POPTR_0019s15180.1
Predicted protein (271 aa)
       
      0.919
POPTR_0013s15430.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI50_POPTR] (270 aa)
       
      0.919
POPTR_0017s10610.1
Predicted protein (106 aa)
       
      0.918
POPTR_0010s05540.1
Predicted protein (111 aa)
       
      0.918
POPTR_0008s19150.1
Predicted protein (112 aa)
       
      0.918
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (10%) [HD]