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POPTR_0005s18820.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s18820.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s18820.1Hypothetical protein (623 aa)    
Predicted Functional Partners:
POPTR_0012s00380.1
Predicted protein (619 aa)
     
 
  0.612
POPTR_0015s00270.1
Predicted protein (603 aa)
     
 
  0.587
POPTR_0001s06680.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002304771.1] (1621 aa)
     
 
  0.580
POPTR_0019s02600.1
Predicted protein (614 aa)
     
 
  0.571
POPTR_0012s00300.1
Predicted protein (619 aa)
     
 
  0.570
POPTR_0001s31730.1
Predicted protein (660 aa)
       
 
  0.560
POPTR_0002s14830.1
Predicted protein (310 aa)
     
 
  0.505
POPTR_0016s10580.1
Predicted protein (282 aa)
     
 
  0.493
POPTR_0014s09980.1
Predicted protein (331 aa)
     
 
  0.493
POPTR_0014s06480.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002320686.1] (272 aa)
     
 
  0.493
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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