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POPTR_0005s18890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s18890.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s18890.1Uncharacterized protein (451 aa)    
Predicted Functional Partners:
POPTR_0009s10440.1
annotation not available (467 aa)
         
  0.944
POPTR_0004s14810.1
Ferredoxin--nitrite reductase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGV2_POPTR] (588 aa)
         
  0.944
POPTR_0001s20670.1
Glutamate dehydrogenase family protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (634 aa)
   
 
  0.905
POPTR_0019s05050.1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (411 aa)
       
  0.903
POPTR_0015s12250.1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (411 aa)
       
  0.903
POPTR_0013s05480.1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (411 aa)
       
  0.903
POPTR_0012s11500.1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (411 aa)
       
  0.903
POPTR_0001s19430.1
Glutamate dehydrogenase family protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family (247 aa)
       
  0.903
FDH1
Formate dehydrogenase, mitochondrial; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily (387 aa)
         
    0.900
POPTR_0002s21950.1
annotation not available (148 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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