STRINGSTRING
POPTR_0005s19910.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s19910.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s19910.1Predicted protein (412 aa)    
Predicted Functional Partners:
POPTR_0013s00810.1
Predicted protein (610 aa)
           
  0.577
POPTR_0005s01440.1
Predicted protein (615 aa)
           
  0.577
POPTR_0014s15460.1
Predicted protein (580 aa)
           
  0.531
POPTR_0011s01470.1
Hypothetical protein (607 aa)
           
  0.531
POPTR_0001s34020.1
Predicted protein (680 aa)
           
  0.503
POPTR_0015s12080.1
Predicted protein (984 aa)
           
  0.424
POPTR_0014s07410.1
Predicted protein; ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insert [...] (409 aa)
           
  0.424
POPTR_0012s11300.1
Putative uncharacterized protein (970 aa)
           
  0.424
POPTR_0010s21910.1
Predicted protein (123 aa)
           
  0.424
POPTR_0010s21630.1
Predicted protein (381 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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