STRINGSTRING
POPTR_0005s19990.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s19990.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s19990.1Predicted protein (697 aa)    
Predicted Functional Partners:
POPTR_0018s06290.1
Predicted protein (421 aa)
         
  0.907
POPTR_0001s10590.1
acyl-coA synthetase family protein (643 aa)
   
 
0.903
POPTR_0003s13950.1
Predicted protein (662 aa)
   
 
0.903
POPTR_0017s08700.1
Uncharacterized protein (424 aa)
   
 
0.863
POPTR_0001s32900.1
Predicted protein (752 aa)
   
 
0.861
POPTR_0013s02220.1
Predicted protein (695 aa)
   
 
0.853
POPTR_0010s10050.1
Predicted protein (656 aa)
   
 
0.852
POPTR_0009s11300.1
Predicted protein (658 aa)
   
 
0.848
POPTR_0002s19330.1
Predicted protein (469 aa)
   
 
0.846
POPTR_0018s08940.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI99_POPTR] (763 aa)
   
 
  0.821
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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