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POPTR_0005s20290.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s20290.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s20290.1Predicted protein (367 aa)    
Predicted Functional Partners:
POPTR_0016s04150.1
Predicted protein (516 aa)
   
  0.892
POPTR_0015s10030.1
Predicted protein (366 aa)
   
  0.890
POPTR_0007s09600.1
Predicted protein (617 aa)
   
  0.890
POPTR_0006s04410.1
Uncharacterized protein (133 aa)
   
  0.890
POPTR_0005s11540.1
Predicted protein (366 aa)
   
  0.890
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
       
 
  0.676
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
       
 
  0.676
POPTR_0003s15220.1
Predicted protein (584 aa)
       
 
  0.666
POPTR_0018s10090.1
Predicted protein (290 aa)
     
 
  0.648
POPTR_0015s13250.1
Predicted protein (541 aa)
   
 
  0.627
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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