STRINGSTRING
POPTR_0005s20460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s20460.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s20460.1Uncharacterized protein (798 aa)    
Predicted Functional Partners:
POPTR_0001s08650.1
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1109 aa)
     
  0.956
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
  0.956
POPTR_0001s06450.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GM06_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (842 aa)
     
  0.955
POPTR_0003s19630.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GWX9_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
     
  0.953
POPTR_0009s10050.1
Predicted protein (323 aa)
     
  0.941
POPTR_1112s00210.1
Histone H3 (99 aa)
       
  0.898
POPTR_0108s00230.1
Putative uncharacterized protein (84 aa)
       
  0.898
POPTR_0014s09260.1
Histone H3 [source-UniProtKB/TrEMBL;Acc-A9P905_POPTR] (136 aa)
       
  0.898
POPTR_0014s09210.1
Histone H3 [source-UniProtKB/TrEMBL;Acc-B9I8W1_POPTR] (129 aa)
       
  0.898
POPTR_0007s13920.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8F8_POPTR] (136 aa)
       
  0.898
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]