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POPTR_0005s20560.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s20560.1" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s20560.1Uncharacterized protein (177 aa)    
Predicted Functional Partners:
POPTR_0010s12050.1
Inorganic carbon transport family protein (187 aa)
     
   
  0.940
POPTR_0013s15650.1
Uncharacterized protein (231 aa)
   
   
  0.899
POPTR_0007s04100.1
Uncharacterized protein (157 aa)
     
   
  0.898
POPTR_0009s14340.1
Alanine--tRNA ligase, chloroplastic/mitochondrial; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family (994 aa)
     
        0.894
POPTR_0014s10790.1
Protein translocase subunit SecA; Belongs to the SecA family (963 aa)
     
        0.884
POPTR_0008s06640.1
Uncharacterized protein (541 aa)
     
        0.880
ndhK
NAD(P)H-quinone oxidoreductase subunit K, chloroplastic; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (94 aa)
           
  0.877
POPTR_0003s18370.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCD9_POPTR] (316 aa)
     
        0.867
POPTR_0003s18420.1
Uncharacterized protein (269 aa)
     
        0.866
POPTR_0010s19810.1
annotation not available (181 aa)
     
        0.866
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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