STRINGSTRING
POPTR_0005s22070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s22070.1" - Hypothetical protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s22070.1Hypothetical protein (185 aa)    
Predicted Functional Partners:
POPTR_0009s01980.1
Predicted protein (593 aa)
     
 
  0.943
POPTR_0004s22080.1
Predicted protein (432 aa)
     
 
  0.943
POPTR_0017s07190.1
Uncharacterized protein (385 aa)
     
 
  0.826
POPTR_0017s07150.1
Uncharacterized protein (246 aa)
     
 
  0.826
POPTR_0017s00420.1
Predicted protein (454 aa)
     
 
  0.826
POPTR_0007s03250.1
Predicted protein (444 aa)
     
 
  0.826
POPTR_0007s00270.1
Predicted protein (444 aa)
     
 
  0.826
POPTR_0019s05160.1
Tubulin alpha-8 chain [source-UniProtKB/TrEMBL;Acc-B9IPR1_POPTR]; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (449 aa)
         
  0.806
POPTR_0017s11740.1
Tubulin alpha-7 chain [source-UniProtKB/TrEMBL;Acc-B9IJV8_POPTR]; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (454 aa)
         
  0.806
POPTR_0013s05340.1
Tubulin alpha-6 chain [source-UniProtKB/TrEMBL;Acc-B9I5W9_POPTR]; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (449 aa)
         
  0.806
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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