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POPTR_0005s22210.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s22210.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s22210.1Uncharacterized protein (358 aa)    
Predicted Functional Partners:
POPTR_0015s07330.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family (223 aa)
   
   
  0.742
POPTR_0018s00550.1
Uncharacterized protein (985 aa)
       
 
  0.676
POPTR_0006s25700.1
Uncharacterized protein (985 aa)
       
 
  0.676
POPTR_0015s04720.1
Uncharacterized protein (1218 aa)
         
  0.645
POPTR_0018s07290.1
Uncharacterized protein (483 aa)
           
  0.632
POPTR_0006s13810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHU1_POPTR] (456 aa)
           
  0.632
POPTR_0007s06010.1
C2 domain-containing family protein (2116 aa)
           
  0.631
POPTR_0005s08190.1
Uncharacterized protein (2151 aa)
           
  0.631
POPTR_0846s00200.1
annotation not available (149 aa)
   
 
  0.623
POPTR_0019s05000.1
Uncharacterized protein (345 aa)
   
 
  0.623
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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