STRINGSTRING
POPTR_0005s22570.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s22570.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s22570.1Predicted protein (336 aa)    
Predicted Functional Partners:
POPTR_0015s12260.1
Light harvesting-like protein 3 [source-UniProtKB/TrEMBL;Acc-B9ICE6_POPTR] (253 aa)
     
        0.470
POPTR_0005s19570.1
Uncharacterized protein (421 aa)
     
        0.470
POPTR_0004s02160.1
Predicted protein (265 aa)
     
        0.470
POPTR_0002s22750.1
Predicted protein (101 aa)
     
        0.470
POPTR_0018s14900.1
Uncharacterized protein (139 aa)
     
        0.466
POPTR_0010s07330.1
Predicted protein (91 aa)
     
        0.462
POPTR_0016s03430.1
Predicted protein (136 aa)
     
        0.451
POPTR_0010s15760.1
Peroxidase (206 aa)
     
        0.447
POPTR_0008s08840.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9HI89_POPTR] (482 aa)
     
        0.446
POPTR_0004s09900.1
Predicted protein (189 aa)
     
        0.445
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: high (97%) [HD]