STRINGSTRING
POPTR_0005s22830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s22830.1" - Putative uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s22830.1Putative uncharacterized protein (262 aa)    
Predicted Functional Partners:
POPTR_0010s21730.1
Predicted protein (243 aa)
   
 
  0.906
POPTR_0005s24030.1
Putative uncharacterized protein (134 aa)
     
 
  0.872
POPTR_0002s04520.1
Putative uncharacterized protein (133 aa)
     
 
  0.867
POPTR_0006s14630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE66_POPTR] (121 aa)
     
 
  0.867
POPTR_0018s07160.1
Predicted protein (122 aa)
     
 
  0.856
POPTR_0002s05660.1
Putative uncharacterized protein (262 aa)
   
 
0.812
POPTR_0104s00240.1
Predicted protein (54 aa)
       
      0.802
POPTR_0008s05010.1
Predicted protein (182 aa)
         
    0.800
POPTR_0006s10040.1
Light-harvesting complex II protein Lhcb4 [source-UniProtKB/TrEMBL;Acc-B9HCM1_POPTR] (285 aa)
     
      0.774
POPTR_0016s12260.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFN3_POPTR] (283 aa)
     
      0.771
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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