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POPTR_0005s23110.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s23110.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s23110.1Predicted protein (437 aa)    
Predicted Functional Partners:
POPTR_0013s00760.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGZ8_POPTR] (380 aa)
   
 
0.823
POPTR_0005s01370.1
Uncharacterized protein (380 aa)
   
 
0.787
POPTR_0016s11610.1
Predicted protein (414 aa)
     
        0.693
POPTR_0001s34620.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002323770.1] (447 aa)
   
        0.687
POPTR_0013s02740.1
Predicted protein (292 aa)
   
        0.643
POPTR_0005s04090.1
Predicted protein (292 aa)
   
        0.639
POPTR_0002s25810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHJ0_POPTR] (181 aa)
   
        0.620
POPTR_0010s21710.1
Predicted protein (235 aa)
   
        0.607
POPTR_0014s10200.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFP7_POPTR] (172 aa)
   
        0.604
POPTR_0002s05720.1
Predicted protein (176 aa)
   
        0.589
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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