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POPTR_0005s23670.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s23670.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s23670.1Uncharacterized protein (502 aa)    
Predicted Functional Partners:
POPTR_0015s09200.1
Transcription factor jumonji domain-containing family protein (553 aa)
           
  0.756
POPTR_0014s02120.1
Cyclin A3.1 family protein; Belongs to the cyclin family (363 aa)
           
  0.621
POPTR_0002s12310.1
Cyclin A3.1 family protein; Belongs to the cyclin family (360 aa)
           
  0.621
POPTR_0002s09960.1
Uncharacterized protein (932 aa)
           
  0.599
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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