STRINGSTRING
POPTR_0005s23710.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s23710.1" - Autoinhibited calcium ATPase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s23710.1Autoinhibited calcium ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium (1033 aa)    
Predicted Functional Partners:
POPTR_0009s03080.1
Annotation not available (269 aa)
   
 
  0.775
POPTR_0005s23720.1
Predicted protein (120 aa)
     
 
  0.672
POPTR_0005s28110.1
Predicted protein (197 aa)
     
 
  0.665
POPTR_0002s00350.1
Predicted protein (192 aa)
     
 
  0.665
POPTR_0002s04810.1
Predicted protein (153 aa)
     
 
  0.664
POPTR_0013s05970.1
Predicted protein (115 aa)
     
 
  0.662
POPTR_0013s03770.1
Hypothetical protein (106 aa)
     
 
  0.657
POPTR_0005s05430.1
Predicted protein (149 aa)
     
 
  0.656
POPTR_0017s12100.1
Predicted protein (212 aa)
     
 
  0.656
POPTR_0004s12170.1
Predicted protein (210 aa)
     
 
  0.656
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (6%) [HD]