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POPTR_0005s27730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s27730.1" - XYLEM CYSTEINE PEPTIDASE 2 family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s27730.1XYLEM CYSTEINE PEPTIDASE 2 family protein; Belongs to the peptidase C1 family (368 aa)    
Predicted Functional Partners:
POPTR_0002s23290.1
Pirin-like family protein; Belongs to the pirin family (325 aa)
     
 
  0.627
POPTR_0014s14780.1
Pirin-like family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PG77_POPTR]; Belongs to the pirin family (325 aa)
       
 
  0.622
MYB003
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GFE8_POPTR] (327 aa)
     
 
  0.617
MYB021
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HNW3_POPTR] (321 aa)
     
 
  0.607
MYB020
MYB transcription factor; Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HNP3_POPTR] (333 aa)
     
 
  0.606
POPTR_0019s11330.1
Uncharacterized protein; Wood-associated NAC domain transcription factor 6B [source-UniProtKB/TrEMBL;Acc-E5KUI2_POPTR] (307 aa)
     
   
  0.599
NAC055
NAC domain protein, IPR003441Wood-associated NAC domain transcription factor 6A [source-UniProtKB/TrEMBL;Acc-B9MW79_POPTR] (319 aa)
     
   
  0.599
MYB002
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GF09_POPTR] (281 aa)
       
 
  0.596
POPTR_0007s09360.1
Uncharacterized protein (278 aa)
           
  0.564
POPTR_0006s15430.1
Uncharacterized protein (1141 aa)
           
  0.564
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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