STRINGSTRING
POPTR_0005s27730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s27730.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s27730.1Predicted protein (368 aa)    
Predicted Functional Partners:
POPTR_0015s08010.1
Predicted protein (301 aa)
       
    0.577
POPTR_0010s11060.1
Predicted protein (301 aa)
       
    0.577
POPTR_0008s14080.1
Uncharacterized protein (285 aa)
       
    0.571
POPTR_0014s17660.1
Annotation not available (365 aa)
     
 
    0.565
POPTR_0011s12460.1
Predicted protein (1259 aa)
     
 
    0.562
POPTR_0010s19850.1
Predicted protein (347 aa)
     
 
    0.560
POPTR_0001s16590.1
Predicted protein (218 aa)
     
 
    0.557
POPTR_0008s16120.1
Predicted protein (753 aa)
     
 
    0.556
POPTR_0006s27580.1
Predicted protein (1183 aa)
     
 
    0.554
POPTR_0017s13520.1
Predicted protein (379 aa)
       
  0.554
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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