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POPTR_0006s03930.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0006s03930.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0006s03930.1Predicted protein (387 aa)    
Predicted Functional Partners:
POPTR_0015s03920.1
Uncharacterized protein (152 aa)
       
  0.524
POPTR_0012s05040.1
Predicted protein; Catalyzes the epimerization of various hydrophobic and polar dipeptides. Has epimerase activity with L-Ala-L-Ala, L-Ala- L-Ser, L-Ala-L-Thr and L-Ala-L-Trp (in vitro) (421 aa)
       
  0.524
POPTR_0006s04750.1
Predicted protein (376 aa)
           
  0.508
POPTR_0015s01950.1
Predicted protein (2228 aa)
     
   
  0.505
POPTR_0012s01860.1
Predicted protein (2230 aa)
     
   
  0.505
POPTR_0015s01600.1
Predicted protein (584 aa)
           
  0.501
POPTR_0014s09450.1
Predicted protein (591 aa)
           
  0.501
POPTR_0012s02180.1
Predicted protein (584 aa)
           
  0.501
POPTR_0001s10740.1
Predicted protein (583 aa)
           
  0.501
POPTR_0365s00210.1
Uncharacterized protein (209 aa)
   
          0.472
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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