STRINGSTRING
POPTR_0006s07980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0006s07980.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0006s07980.1Predicted protein (443 aa)    
Predicted Functional Partners:
POPTR_0013s02740.1
Predicted protein (292 aa)
 
          0.549
POPTR_0005s04090.1
Predicted protein (292 aa)
 
          0.542
POPTR_0001s34690.1
Predicted protein (116 aa)
   
          0.505
POPTR_0133s00200.1
Predicted protein (121 aa)
   
          0.491
POPTR_0005s05130.1
Predicted protein (407 aa)
   
 
      0.488
POPTR_0006s05910.1
Predicted protein (251 aa)
   
          0.486
POPTR_0001s10480.1
Uncharacterized protein (119 aa)
   
          0.486
POPTR_0001s38510.1
Annotation not available (96 aa)
   
          0.480
POPTR_0010s17850.1
Predicted protein (386 aa)
   
          0.477
POPTR_0017s10910.1
Uncharacterized protein (248 aa)
   
          0.473
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (3%) [HD]