STRINGSTRING
POPTR_0006s10040.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0006s10040.1" - Light-harvesting complex II protein Lhcb4 [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0006s10040.1Light-harvesting complex II protein Lhcb4 [source-UniProtKB/TrEMBL;Acc-B9HCM1_POPTR] (285 aa)    
Predicted Functional Partners:
POPTR_0016s12260.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFN3_POPTR] (283 aa)
     
 
 
0.845
POPTR_0002s05660.1
Putative uncharacterized protein (262 aa)
     
      0.814
POPTR_0008s06720.1
Light-harvesting complex II protein Lhcb8 [source-UniProtKB/TrEMBL;Acc-B9HHN0_POPTR] (275 aa)
     
 
0.811
POPTR_0001s11600.1
Putative uncharacterized protein (224 aa)
     
   
  0.784
POPTR_0005s22830.1
Putative uncharacterized protein (262 aa)
     
      0.774
POPTR_0004s03160.1
Putative uncharacterized protein (234 aa)
     
   
  0.764
POPTR_0002s01740.1
Predicted protein; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I (168 aa)
     
   
  0.764
POPTR_0001s21740.1
Light-harvesting complex II protein Lhcb6Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFP4_POPTR] (257 aa)
     
   
0.762
POPTR_0006s14630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE66_POPTR] (121 aa)
     
      0.750
POPTR_0004s20960.1
Predicted protein (151 aa)
     
        0.745
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (13%) [HD]