STRINGSTRING
POPTR_0006s11570.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0006s11570.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0006s11570.1Predicted protein (434 aa)    
Predicted Functional Partners:
POPTR_0015s01950.1
Predicted protein (2228 aa)
   
 
  0.948
POPTR_0012s01860.1
Predicted protein (2230 aa)
   
 
  0.946
POPTR_0016s08580.1
Predicted protein (250 aa)
     
 
  0.938
POPTR_0006s13440.1
Predicted protein (249 aa)
     
 
  0.938
POPTR_0009s02070.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9V0_POPTR] (249 aa)
     
 
  0.911
POPTR_0016s03990.1
Predicted protein (603 aa)
       
  0.909
POPTR_0006s04170.1
Predicted protein (295 aa)
       
  0.909
POPTR_0005s20140.1
Predicted protein (423 aa)
         
  0.907
POPTR_0009s13650.1
Predicted protein (286 aa)
         
  0.907
POPTR_0006s27060.1
Predicted protein (337 aa)
         
  0.907
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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