STRINGSTRING
POPTR_0007s04880.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0007s04880.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0007s04880.1Uncharacterized protein (551 aa)    
Predicted Functional Partners:
POPTR_0018s10380.1
Uncharacterized protein (960 aa)
           
  0.676
POPTR_0006s18610.1
Uncharacterized protein (1088 aa)
           
  0.676
POPTR_0013s11570.1
tRNA-nucleotidyltransferase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family (528 aa)
         
  0.656
POPTR_0017s09700.1
Uncharacterized protein (70 aa)
           
  0.648
POPTR_0001s33620.1
Uncharacterized protein (70 aa)
           
  0.648
POPTR_0003s12830.1
Uncharacterized protein (534 aa)
   
 
  0.640
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
   
 
  0.629
POPTR_0011s00960.1
Putative cytoskeletal protein mRNA (789 aa)
     
   
  0.606
POPTR_0004s00450.1
Putative cytoskeletal protein mRNA (785 aa)
     
   
  0.606
SAUR47
SAUR family protein [source-UniProtKB/TrEMBL;Acc-B9INC4_POPTR] (163 aa)
           
  0.597
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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